September 3, 2012

SIRAH forcefield in GROMACS

Simulation of a coarse grained DNA molecule in explicit solvent

Tutorial 2

Hybrid solvation: Plugging SIRAH solvent to your atomistic system

Tutorial 3

Simulation of coarse grained proteins in explicit solvent

Tutorial 4

Out of the box simulations of closed circular DNA

Tutorial 5

Simulation of coarse grained lipid bilayers in explicit solvent