August 1, 2012

SIRAH forcefield in AMBER


Simulation of a coarse grained DNA molecule in implicit solvent






Simulation of a coarse grained DNA molecule in explicit solvent






Multiscale simulation of TBP bound to HIV promoter in implicit solvent



Simulations of closed circular DNA at coarse-grained level





Tutorial 5

Simulations of coarse grained proteins in explicit solvent




Tutorial 6

Simulation of coarse grained lipid bilayers in explicit solvent





Tutorial 7

Simulation of coarse grained membrane proteins in explicit solvent