Biomolecular Simulations Group
SIRAH for AMBER
SIRAH for GROMACS
SIRAH in AMBER
SIRAH in GROMACS
SIRAH forcefield in AMBER
sirah in amber
Simulation of a coarse grained DNA molecule in implicit solvent
Simulation of a coarse grained DNA molecule in explicit solvent
Multiscale simulation of TBP bound to HIV promoter in implicit solvent
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All-atoms/Coarse-Grained model of DNA
Hybrid simulations of molecular systems combining all-atom (AA) with coarse grain (CG) representations are a valuable alternative to get at...
FOCEM Course: Introduction to Structural Biology and Bioinformatics
FOCEM Course: Introduction to Structural Biology and Bioinformatics 11 – 15 November 2013 Institut Pasteur de Montevideo, Uruguay. ...
Assessing the Accuracy of the SIRAH Force Field to Model DNA at Coarse Grain Level. Lect. Notes in Comp. Science , 2013 Link to Article...
SIRAH Force field for amino acids, solvent and nucleotides
Coarse-grain (CG) techniques applied to molecular simulations allow for a considerable extension of the accessible size and time scales ...
A Coarse Grained Model for Atomic-Detailed DNA Simulations with Explicit Electrostatics.
Although many CG representations are available for the most common biomacromolecules, very few have been reported for nucleic acids. Our CG...
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