We published a manuscript in Bioinformaics [link to article] presenting a set of utilities
to:
- Easily convert atomistic coordinates to residue-based CG schemes
- Write GROMACS’ topologies at arbitrary level of resolution into PSF format
- A Tcl plugin for VMD to visualize, analyze and retrieve pseudo-atomistic information (backmap) from CG trajectories performed with the SIRAH force field.
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