December 7, 2015

Introducing SIRAH Tools!


We published a manuscript in Bioinformaics [link to article] presenting a set of utilities to:
  • Easily convert atomistic coordinates to residue-based CG schemes
  • Write GROMACS’ topologies at arbitrary level of resolution into PSF format
  • A Tcl plugin for VMD to visualize, analyze and retrieve pseudo-atomistic information (backmap) from CG trajectories performed with the SIRAH force field.