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September 22, 2014
IYCr2014 just started, SIRAH is there!
Great time sharing with Latin American scientists dealing with structural biology.
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SIRAH forcefield in AMBER
Tutorial 1 Simulation of a coarse grained DNA molecule in implicit solvent Tutorial 2 Simulation of a coarse grained...
SIRAH forcefield in GROMACS
Tutorial 1 Simulation of a coarse grained DNA molecule in explicit solvent Tutorial 2 Hybrid solvation: Plugging S...
SIRAH Force field for amino acids, solvent and nucleotides
Coarse-grain (CG) techniques applied to molecular simulations allow for a considerable extension of the accessible size and time scale...
Publications
Post-Translational Modifications at the Coarse-Grained Level with the SIRAH Force Field. JCIM , 2019 . Link to Article Fat SIRAH: Coa...
A Coarse Grained Model for Atomic-Detailed DNA Simulations with Explicit Electrostatics.
Although many CG representations are available for the most common biomacromolecules, very few have been reported for nucleic acids. Our CG...
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